2OEV Protein Transport date Jan 01, 2007
title Crystal Structure Of Alixaip1
authors R.D.Fisher, Q.Zhai, H.Robinson, C.P.Hill
compound source
Molecule: Programmed Cell Death 6-Interacting Protein
Chain: A
Fragment: Bro1-V Domains, Residues 1-698
Synonym: Pdcd6-Interacting Protein, Alg-2-Interacting Prote Hp95;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdcd6ip, Aip1, Alix, Kiaa1375
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+(Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151d-Topo
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.993 98.510 72.159 90.00 105.64 90.00
method X-Ray Diffractionresolution 3.30 Å
Primary referenceStructural and biochemical studies of ALIX/AIP1 and its role in retrovirus budding., Fisher RD, Chung HY, Zhai Q, Robinson H, Sundquist WI, Hill CP, Cell. 2007 Mar 9;128(5):841-52. PMID:17350572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (2oev.pdb1.gz) 232 Kb
  • CSU: Contacts of Structural Units for 2OEV
  • Likely Quarternary Molecular Structure file(s) for 2OEV
  • Structure Factors (119 Kb)
  • Retrieve 2OEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OEV from S2C, [Save to disk]
  • Re-refined 2oev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OEV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OEV, from MSDmotif at EBI
  • Fold representative 2oev from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oev] [2oev_A]
  • SWISS-PROT database: [Q8WUM4]
  • Domain organization of [PDC6I_HUMAN] by SWISSPFAM
  • Domain found in 2OEV: [BRO1 ] by SMART
  • Other resources with information on 2OEV
  • Community annotation for 2OEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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