2OEX Protein Transport date Jan 01, 2007
title Structure Of Alixaip1 V Domain
authors R.D.Fisher, Q.Zhai, H.Robinson, C.P.Hill
compound source
Molecule: Programmed Cell Death 6-Interacting Protein
Chain: A, B
Fragment: V Domain, Residues 359-702
Synonym: Pdcd6-Interacting Protein, Alg-2-Interacting Prote Hp95;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdcd6ip, Aip1, Alix, Kiaa1375
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Codon + (Ril)
symmetry Space Group: P 1 21 1
R_factor 0.228 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.861 50.049 130.171 90.00 101.13 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand MSE enzyme
Primary referenceStructural and biochemical studies of ALIX/AIP1 and its role in retrovirus budding., Fisher RD, Chung HY, Zhai Q, Robinson H, Sundquist WI, Hill CP, Cell. 2007 Mar 9;128(5):841-52. PMID:17350572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (2oex.pdb1.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 2OEX
  • CSU: Contacts of Structural Units for 2OEX
  • Likely Quarternary Molecular Structure file(s) for 2OEX
  • Structure Factors (2216 Kb)
  • Retrieve 2OEX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OEX from S2C, [Save to disk]
  • Re-refined 2oex structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OEX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OEX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OEX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oex_A] [2oex] [2oex_B]
  • SWISS-PROT database: [Q8WUM4]
  • Domain organization of [PDC6I_HUMAN] by SWISSPFAM
    • Other resources with information on 2OEX
  • Community annotation for 2OEX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science