2OGO	Ribosome	date	Jan 07, 2007
title	The Crystal Structure Of The Large Ribosomal Subunit From De Radiodurans Complexed With The Pleuromutilin Derivative Ret (Sb-275833)
authors	C.Davidovich, A.Bashan, T.Auerbach-Nevo, A.Yonath
compound		source
Molecule: 23s Ribosomal Rna Chain		Organism_scientific: Deinococcus Radiodurans Organism_taxid: 1299
Molecule: 50s Ribosomal Protein L3 Chain: B		Organism_scientific: Deinococcus Radiodurans Organism_taxid: 1299
symmetry	Space Group: I 2 2 2	R_factor 0.260 R_Free 0.334
crystal cell	length a length b length c angle alpha angle beta angle gamma 170.115 405.873 695.243 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.66 Å
ligand	G34	enzyme
Gene Ontology	Chain Function Process Component B
Primary reference	Induced-fit tightens pleuromutilins binding to ribosomes and remote interactions enable their selectivity., Davidovich C, Bashan A, Auerbach-Nevo T, Yaggie RD, Gontarek RR, Yonath A, Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4291-6. Epub 2007 Mar 8. PMID:17360517

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1009 Kb) [Save to disk] Biological Unit Coordinates (2ogo.pdb1.gz) 1003 Kb LPC: Ligand-Protein Contacts for 2OGO CSU: Contacts of Structural Units for 2OGO Likely Quarternary Molecular Structure file(s) for 2OGO Structure Factors (2317 Kb) Retrieve 2OGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OGO from S2C, [Save to disk] Re-refined 2ogo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OGO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OGO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OGO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ogo_0] [2ogo_B] [2ogo] SWISS-PROT database: [Q9RXK2] Domain organization of [RL3_DEIRA] by SWISSPFAM

Other resources with information on 2OGO

Community annotation for 2OGO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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