2OGV Transferase date Jan 09, 2007
title Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain
authors M.Walter, I.S.Lucet, O.Patel, S.E.Broughton, R.Bamert, N.K.Williams, E.Fantino, A.F.Wilks, J.Rossjohn
compound source
Molecule: Macrophage Colony-Stimulating Factor 1 Receptor Precursor;
Chain: A
Fragment: Kinase Domain: Residues 543-918
Synonym: Csf-1-R, Fms Proto-Oncogene, C-Fms, Cd115 Antigen
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf1r, Fms
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_vector: Dh10bac
Expression_system_plasmid: Pfast Bac Htc
symmetry Space Group: P 21 21 2
R_factor 0.206 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.253 57.298 56.785 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 2.7 A crystal structure of the autoinhibited human c-Fms kinase domain., Walter M, Lucet IS, Patel O, Broughton SE, Bamert R, Williams NK, Fantino E, Wilks AF, Rossjohn J, J Mol Biol. 2007 Mar 30;367(3):839-47. Epub 2007 Jan 20. PMID:17292918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2ogv.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 2OGV
  • Likely Quarternary Molecular Structure file(s) for 2OGV
  • Structure Factors (74 Kb)
  • Retrieve 2OGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OGV from S2C, [Save to disk]
  • Re-refined 2ogv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OGV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OGV, from MSDmotif at EBI
  • Fold representative 2ogv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ogv]
  • SWISS-PROT database: [P07333]
  • Domain organization of [CSF1R_HUMAN] by SWISSPFAM
  • Domain found in 2OGV: [TyrKc ] by SMART
  • Other resources with information on 2OGV
  • Community annotation for 2OGV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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