2OGZ	Hydrolase	date	Jan 09, 2007
title	Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl Ketone
authors	D.E.Timm
compound		source
Molecule: Dipeptidyl Peptidase Chain: A, B Fragment: Dpp-Iv Extracellular Domain, Residues 39-766 Ec: 3.4.14.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpp4, Adcp2, Cd26 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.233 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.595 122.304 112.721 90.00 100.20 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	U1N BindingDB	enzyme	Hydrolase E.C.3.4.14.5 BRENDA
Gene Ontology	Chain Function Process Component A, B virus receptor activity chemorepellent activity
Primary reference	Discovery of non-covalent dipeptidyl peptidase IV inhibitors which induce a conformational change in the active site., Sheehan SM, Mest HJ, Watson BM, Klimkowski VJ, Timm DE, Cauvin A, Parsons SH, Shi Q, Canada EJ, Wiley MR, Ruehter G, Evers B, Petersen S, Blaszczak LC, Pulley SR, Margolis BJ, Wishart GN, Renson B, Hankotius D, Mohr M, Zechel JC, Michael Kalbfleisch J, Dingess-Hammond EA, Boelke A, Weichert AG, Bioorg Med Chem Lett. 2007 Mar 15;17(6):1765-8. Epub 2006 Dec 24. PMID:17239592

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk] Biological Unit Coordinates (2ogz.pdb1.gz) 246 Kb LPC: Ligand-Protein Contacts for 2OGZ CSU: Contacts of Structural Units for 2OGZ Likely Quarternary Molecular Structure file(s) for 2OGZ Structure Factors (691 Kb) Retrieve 2OGZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OGZ from S2C, [Save to disk] Re-refined 2ogz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OGZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OGZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OGZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ogz_B] [2ogz_A] [2ogz] SWISS-PROT database: [P27487] Domain organization of [DPP4_HUMAN] by SWISSPFAM

Other resources with information on 2OGZ

Community annotation for 2OGZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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