2OH2 Transferase Dna date Jan 09, 2007
title Ternary Complex Of Human Dna Polymerase
authors S.Lone, S.A.Townson, S.N.Uljon, S.Prakash, L.Prakash, A.K.Aggarwa
compound source
Molecule: 5'-D(Gpgpggpgpapapgpgpapcpcpc)-3'
Chain: S, P
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Tptcpcpapgpgpgptpcpcptptpcpcp 3';
Chain: Q, T
Engineered: Yes

Synthetic: Yes

Molecule: Dna Polymerase Kappa
Chain: A, B
Synonym: Dinb Protein, Dinp
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polk, Dinb1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj5464
symmetry Space Group: C 2 2 21
R_factor 0.231 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.150 152.472 217.389 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
ligand MG, TTP enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (2oh2.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (2oh2.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 2OH2
  • CSU: Contacts of Structural Units for 2OH2
  • Likely Quarternary Molecular Structure file(s) for 2OH2
  • Structure Factors (305 Kb)
  • Retrieve 2OH2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OH2 from S2C, [Save to disk]
  • Re-refined 2oh2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OH2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OH2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OH2, from MSDmotif at EBI
  • Fold representative 2oh2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oh2] [2oh2_Q] [2oh2_T] [2oh2_B] [2oh2_P] [2oh2_S] [2oh2_A]
  • SWISS-PROT database: [Q9UBT6]
  • Domain organization of [POLK_HUMAN] by SWISSPFAM
  • Other resources with information on 2OH2
  • Community annotation for 2OH2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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