2OH4	Transferase	date	Jan 09, 2007
title	Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibi
authors	R.T.Nolte, L.Wang
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Kinase Domain Synonym: Vegfr-2,Fetal Liver Kinase 1,Flk-1,Kinase Insert D Receptor,Kdr,Protein-Tyrosine Kinase Receptor Flk-1; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1, Vegfr2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.370 94.250 95.754 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	GIG, PTR, SO4	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of Novel Benzimidazoles as Potent Inhibitors of TIE-2 and VEGFR-2 Tyrosine Kinase Receptors., Hasegawa M, Nishigaki N, Washio Y, Kano K, Harris PA, Sato H, Mori I, West RI, Shibahara M, Toyoda H, Wang L, Nolte RT, Veal JM, Cheung M, J Med Chem. 2007 Sep 6;50(18):4453-70. Epub 2007 Aug 4. PMID:17676829

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2oh4.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 2OH4 CSU: Contacts of Structural Units for 2OH4 Likely Quarternary Molecular Structure file(s) for 2OH4 Structure Factors (162 Kb) Retrieve 2OH4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OH4 from S2C, [Save to disk] Re-refined 2oh4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OH4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OH4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OH4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oh4_A] [2oh4] SWISS-PROT database: [P35968] Domain organization of [VGFR2_HUMAN] by SWISSPFAM Domain found in 2OH4: [TyrKc ] by SMART

Other resources with information on 2OH4

Community annotation for 2OH4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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