2OID Transferase date Jan 10, 2007
title Crystal Structure Of Irak4 Kinase Domain Complexed With Amppnp
authors A.Kuglstatter, A.G.Villasenor, M.F.Browner
compound source
Molecule: Interleukin-1 Receptor-Associated Kinase 4
Chain: A, B, C, D
Fragment: Kinase Domain
Synonym: Irak-4, Ny- Ren-64 Antigen
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Irak4
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.116 138.973 89.198 90.00 126.43 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ANP, SEP, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
note 2OID is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCutting Edge: IL-1 Receptor-Associated Kinase 4 Structures Reveal Novel Features and Multiple Conformations., Kuglstatter A, Villasenor AG, Shaw D, Lee SW, Tsing S, Niu L, Song KW, Barnett JW, Browner MF, J Immunol. 2007 Mar 1;178(5):2641-5. PMID:17312103
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (2oid.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2oid.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (2oid.pdb3.gz) 46 Kb
  • Biological Unit Coordinates (2oid.pdb4.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2OID
  • CSU: Contacts of Structural Units for 2OID
  • Likely Quarternary Molecular Structure file(s) for 2OID
  • Retrieve 2OID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OID from S2C, [Save to disk]
  • View 2OID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OID
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OID, from MSDmotif at EBI
  • Fold representative 2oid from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oid]
  • SWISS-PROT database: [Q9NWZ3]
  • Domain organization of [IRAK4_HUMAN] by SWISSPFAM
  • Other resources with information on 2OID
  • Community annotation for 2OID at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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