2OJ9 Transferase date Jan 12, 2007
title Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor
authors J.S.Sack, B.L.Jacobson
compound source
Molecule: Insulin-Like Growth Factor 1 Receptor Precursor (Ec 2.7.10.1) (Insulin-Like Growth Factor I Receptor) (Igf- I Receptor) (Cd221 Antigen);
Chain: A
Fragment: Kinase Domain, Residues 982-1286
Synonym: Cd221 Antigen, Igf1r
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Igf1r
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.271 44.289 65.744 90.00 99.05 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BMI BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and initial SAR of 3-(1H-benzo[d]imidazol-2-yl)pyridin-2(1H)-ones as inhibitors of insulin-like growth factor 1-receptor (IGF-1R)., Velaparthi U, Wittman M, Liu P, Stoffan K, Zimmermann K, Sang X, Carboni J, Li A, Attar R, Gottardis M, Greer A, Chang CY, Jacobsen BL, Sack JS, Sun Y, Langley DR, Balasubramanian B, Vyas D, Bioorg Med Chem Lett. 2007 Apr 15;17(8):2317-21. Epub 2007 Feb 4. PMID:17317169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2oj9.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2OJ9
  • CSU: Contacts of Structural Units for 2OJ9
  • Likely Quarternary Molecular Structure file(s) for 2OJ9
  • Structure Factors (157 Kb)
  • Retrieve 2OJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OJ9 from S2C, [Save to disk]
  • Re-refined 2oj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OJ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OJ9, from MSDmotif at EBI
  • Fold representative 2oj9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oj9_A] [2oj9]
  • SWISS-PROT database: [P08069]
  • Domain organization of [IGF1R_HUMAN] by SWISSPFAM
  • Domain found in 2OJ9: [TyrKc ] by SMART
  • Other resources with information on 2OJ9
  • Community annotation for 2OJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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