OCA Atlas for 2OJE

2OJE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, F
E, A

Primary reference

Zinc induces dimerization of the class II major histocompatibility complex molecule that leads to cooperative binding to a superantigen., Li H, Zhao Y, Guo Y, Li Z, Eisele L, Mourad W, J Biol Chem. 2007 Mar 2;282(9):5991-6000. Epub 2006 Dec 13. PMID:17166841

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]

Biological Unit Coordinates (2oje.pdb1.gz) 102 Kb

Biological Unit Coordinates (2oje.pdb2.gz) 101 Kb

Biological Unit Coordinates (2oje.pdb3.gz) 394 Kb

LPC: Ligand-Protein Contacts for 2OJE

CSU: Contacts of Structural Units for 2OJE

Likely Quarternary Molecular Structure file(s) for 2OJE

Structure Factors (348 Kb)

Retrieve 2OJE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2OJE from S2C, [Save to disk]

Re-refined 2oje structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OJE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oje] [2oje_A] [2oje_B] [2oje_C] [2oje_D] [2oje_E] [2oje_F] [2oje_G] [2oje_H]

SWISS-PROT database: [P04229] [P01903] [Q48898] [Q91LS8]

Domains found in 2OJE: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

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