2OJQ Apoptosis date Jan 13, 2007
title Crystal Structure Of Alix V Domain
authors S.Lee, J.H.Hurley
compound source
Molecule: Programmed Cell Death 6-Interacting Protein
Chain: A
Fragment: V Domain, Residues 360-702
Synonym: Pdcd6-Interacting Protein, Alg-2-Interacting Prote Hp95;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdcd6ip, Aip1, Alix, Kiaa1375
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst2
symmetry Space Group: P 1 21 1
R_factor 0.250 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.650 55.380 113.166 90.00 92.37 90.00
method X-Ray Diffractionresolution 2.87 Å
ligand MSE enzyme
Primary referenceStructural basis for viral late-domain binding to Alix., Lee S, Joshi A, Nagashima K, Freed EO, Hurley JH, Nat Struct Mol Biol. 2007 Feb 4;. PMID:17277784
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2ojq.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 2OJQ
  • CSU: Contacts of Structural Units for 2OJQ
  • Likely Quarternary Molecular Structure file(s) for 2OJQ
  • Structure Factors (76 Kb)
  • Retrieve 2OJQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OJQ from S2C, [Save to disk]
  • Re-refined 2ojq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OJQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OJQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OJQ, from MSDmotif at EBI
  • Fold representative 2ojq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ojq_A] [2ojq]
  • SWISS-PROT database: [Q8WUM4]
  • Domain organization of [PDC6I_HUMAN] by SWISSPFAM
  • Other resources with information on 2OJQ
  • Community annotation for 2OJQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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