2OJX Transferase date Jan 15, 2007
title Molecular And Structural Basis Of Polo-Like Kinase 1 Substrate Recognition: Implications In Centrosomal Localization
authors B.Garcia-Alvarez, G.De Carcer, S.Ibanez, E.Bragado-Nilsson, G.Montoya
compound source
Molecule: Serinethreonine-Protein Kinase Plk1
Chain: A
Fragment: Residues 365-603
Synonym: Polo-Like Kinase 1, Plk-1, Serinethreonine- Protein Kinase 13, Stpk13;
Ec: 2.7.11.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plk1, Plk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Plys
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2

Molecule: Synthetic Peptide
Chain: E
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.186 49.178 56.234 90.00 109.48 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand
enzyme Transferase E.C.2.7.11.21 BRENDA
Primary referenceMolecular and structural basis of polo-like kinase 1 substrate recognition: Implications in centrosomal localization., Garcia-Alvarez B, de Carcer G, Ibanez S, Bragado-Nilsson E, Montoya G, Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3107-12. Epub 2007 Feb 16. PMID:17307877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2ojx.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 2OJX
  • Likely Quarternary Molecular Structure file(s) for 2OJX
  • Structure Factors (68 Kb)
  • Retrieve 2OJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OJX from S2C, [Save to disk]
  • Re-refined 2ojx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OJX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OJX, from MSDmotif at EBI
  • Fold representative 2ojx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ojx_A] [2ojx_E] [2ojx]
  • SWISS-PROT database: [P53350]
  • Domain organization of [PLK1_HUMAN] by SWISSPFAM
  • Other resources with information on 2OJX
  • Community annotation for 2OJX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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