2OK0 Immune System Dna date Jan 15, 2007
title Fab Ed10-Dna Complex
authors R.L.Stanfield, S.Sanguineti, I.A.Wilson, G.De Prat-Gay
compound source
Molecule: 5'-D(Tpc)-3'
Chain: D
Engineered: Yes
Synthetic: Yes

Molecule: Fab Ed10 Light Chain
Chain: L

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Fab Ed10 Heavy Chain
Chain: H

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.711 63.833 83.880 90.00 116.26 90.00
method X-Ray Diffractionresolution 1.89 Å
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceSpecific recognition of a DNA immunogen by its elicited antibody., Sanguineti S, Centeno Crowley JM, Lodeiro Merlo MF, Cerutti ML, Wilson IA, Goldbaum FA, Stanfield RL, de Prat-Gay G, J Mol Biol. 2007 Jun 29;370(1):183-95. Epub 2007 Apr 24. PMID:17512945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2ok0.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 2OK0
  • Likely Quarternary Molecular Structure file(s) for 2OK0
  • Structure Factors (306 Kb)
  • Retrieve 2OK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OK0 from S2C, [Save to disk]
  • Re-refined 2ok0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OK0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OK0, from MSDmotif at EBI
  • Fold representative 2ok0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ok0_H] [2ok0] [2ok0_D] [2ok0_L]
  • SWISS-PROT database: [A2NHM3]
  • Domain organization of [A2NHM3_MOUSE] by SWISSPFAM
  • Domains found in 2OK0: [IG_like] [IGv ] by SMART
  • Other resources with information on 2OK0
  • Community annotation for 2OK0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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