2OKR Transferase date Jan 17, 2007
title Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
authors E.Ter Haar
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A, D
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Mxi2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1392

Molecule: Map Kinase-Activated Protein Kinase 2
Chain: C, F
Fragment: Residues 370-393
Synonym: Mapk-Activated Protein Kinase 2, Mapkap Kinase 2, Mk2;
Ec: 2.7.11.1
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapie (Humans)
symmetry Space Group: P 31
R_factor 0.239 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.550 81.550 121.360 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceCrystal structure of the p38alpha -MAPKAP kinase 2 heterodimer., Ter Haar E, Prabakhar P, Liu X, Lepre C, J Biol Chem. 2007 Jan 25;. PMID:17255097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (2okr.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2okr.pdb2.gz) 60 Kb
  • CSU: Contacts of Structural Units for 2OKR
  • Likely Quarternary Molecular Structure file(s) for 2OKR
  • Structure Factors (1011 Kb)
  • Retrieve 2OKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OKR from S2C, [Save to disk]
  • Re-refined 2okr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OKR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OKR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2okr_F] [2okr_C] [2okr_A] [2okr_D] [2okr]
  • SWISS-PROT database: [P49137] [Q16539]
  • Domain organization of [MAPK2_HUMAN] [MK14_HUMAN] by SWISSPFAM
  • Domain found in 2OKR: [S_TKc ] by SMART
  • Other resources with information on 2OKR
  • Community annotation for 2OKR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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