2OL9 Protein Fibril date Jan 18, 2007
title Peptide Corresponding To Residues 170-175 Of Human Prion
authors M.A.Apostol, M.R.Sawaya, D.Eisenberg
compound source
Molecule: Peptide From Human Prion
Chain: A
Fragment: Residues 170-175
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is Taken From Residues 170-175 Prion
symmetry Space Group: P 1
R_factor 0.073 R_Free 0.078
crystal
cell
length a length b length c angle alpha angle beta angle gamma
14.002 4.879 15.100 75.23 75.88 78.89
method X-Ray Diffractionresolution 0.85 Å
Primary referenceAtomic structures of amyloid cross-beta spines reveal varied steric zippers., Sawaya MR, Sambashivan S, Nelson R, Ivanova MI, Sievers SA, Apostol MI, Thompson MJ, Balbirnie M, Wiltzius JJ, McFarlane HT, Madsen AO, Riekel C, Eisenberg D, Nature. 2007 May 24;447(7143):453-7. Epub 2007 Apr 29. PMID:17468747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (2ol9.pdb1.gz) 3 Kb
  • CSU: Contacts of Structural Units for 2OL9
  • Likely Quarternary Molecular Structure file(s) for 2OL9
  • Structure Factors (35 Kb)
  • Retrieve 2OL9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OL9 from S2C, [Save to disk]
  • Re-refined 2ol9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OL9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OL9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OL9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ol9] [2ol9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2OL9
  • Community annotation for 2OL9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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