2OLM	Hydrolase Regulator	date	Jan 19, 2007
title	Arfgap Domain Of Hiv-1 Rev Binding Protein
authors	Y.Tong, W.Tempel, L.Shen, S.Dimov, R.Landry, C.H.Arrowsmith, A.M.E M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound		source
Molecule: Nucleoporin-Like Protein Rip Chain: A Fragment: Arfgap Domain: Residues 4-141 Synonym: Hiv-1 Rev-Binding Protein, Rev-Interacting Protein Activation Domain-Binding Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hrb, Rab, Rip Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Lic
symmetry	Space Group: P 43 21 2	R_factor 0.180 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.883 57.883 83.696 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.48 Å
ligand	GOL, SO4, UNL, UNX, ZN	enzyme
note	2OLM is a representative structure
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (2olm.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 2OLM CSU: Contacts of Structural Units for 2OLM Likely Quarternary Molecular Structure file(s) for 2OLM Structure Factors (344 Kb) Retrieve 2OLM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OLM from S2C, [Save to disk] Re-refined 2olm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OLM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OLM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OLM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2olm_A] [2olm] SWISS-PROT database: [P52594] Domain organization of [AGFG1_HUMAN] by SWISSPFAM Domain found in 2OLM: [ArfGap ] by SMART

Other resources with information on 2OLM

Community annotation for 2OLM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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