2OLM Hydrolase Regulator date Jan 19, 2007
title Arfgap Domain Of Hiv-1 Rev Binding Protein
authors Y.Tong, W.Tempel, L.Shen, S.Dimov, R.Landry, C.H.Arrowsmith, A.M.E M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound source
Molecule: Nucleoporin-Like Protein Rip
Chain: A
Fragment: Arfgap Domain: Residues 4-141
Synonym: Hiv-1 Rev-Binding Protein, Rev-Interacting Protein Activation Domain-Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hrb, Rab, Rip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 43 21 2
R_factor 0.180 R_Free 0.195
length a length b length c angle alpha angle beta angle gamma
57.883 57.883 83.696 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand GOL, SO4, UNL, UNX, ZN enzyme
note 2OLM is a representative structure

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2olm.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2OLM
  • CSU: Contacts of Structural Units for 2OLM
  • Likely Quarternary Molecular Structure file(s) for 2OLM
  • Structure Factors (344 Kb)
  • Retrieve 2OLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OLM from S2C, [Save to disk]
  • Re-refined 2olm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OLM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OLM, from MSDmotif at EBI
  • Fold representative 2olm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2olm_A] [2olm]
  • SWISS-PROT database: [P52594]
  • Domain organization of [AGFG1_HUMAN] by SWISSPFAM
  • Domain found in 2OLM: [ArfGap ] by SMART
  • Other resources with information on 2OLM
  • Community annotation for 2OLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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