2OM1	Hormone	date	Jan 20, 2007
title	Structure Of Human Insulin In Presence Of Thiocyanate At Ph
authors	M.Norrman, G.Schluckebier
compound		source
Molecule: Insulin A Chain Chain: A, C, E, G, I, K, Q, S, U, X, 1, 3, A, C, E, G, I, K		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Insulin B Chain Chain: B, D, F, H, J, L, R, T, V, Y, 2, 4, B, D, F, H, J, L		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 2 2 21	R_factor 0.175 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.000 219.480 224.480 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.97 Å
ligand	GOL, RCO, SCN, ZN	enzyme
Gene Ontology	Chain Function Process Component S, a, T, K, d, Y, E, 2, j, 1, k, g, e, J, B, H, c, b, D, I, G, U, F, V, Q, h, C, L, f, i, A, 3, X, l, 4, R protease binding insulin receptor binding insulin-like growth factor r... hormone activity protein binding MAPK cascade negative regulation of acute... carbohydrate metabolic proce... glucose metabolic process energy reserve metabolic pro... regulation of transcription,... regulation of cellular amino... acute-phase response G-protein coupled receptor s... cell-cell signaling positive regulation of cell ... insulin receptor signaling p... positive regulation of phosp... glucose transport regulation of transmembrane ... positive regulation of cell ... positive regulation of cell ... endocrine pancreas developme... positive regulation of prote... activation of protein kinase... positive regulation of cellu... negative regulation of prote... regulation of protein locali... negative regulation of NAD(P... wound healing negative regulation of prote... glucose homeostasis negative regulation of apopt... positive regulation of MAPK ... cellular protein metabolic p... small molecule metabolic pro... positive regulation of nitri... positive regulation of cell ... negative regulation of gluco... positive regulation of glyco... positive regulation of DNA r... negative regulation of glyco... positive regulation of glyco... positive regulation of mitos... negative regulation of prote... negative regulation of vasod... positive regulation of vasod... negative regulation of fatty... positive regulation of gluco... positive regulation of insul... alpha-beta T cell activation... positive regulation of lipid... regulation of protein secret... negative regulation of prote... positive regulation of cytok... positive regulation of pepti... regulation of insulin secret... negative regulation of lipid... positive regulation of nitri... positive regulation of NF-ka... positive regulation of prote... fatty acid homeostasis negative regulation of respi... positive regulation of respi... positive regulation of pepti... positive regulation of brown... negative regulation of feedi... extracellular region extracellular space endoplasmic reticulum lumen Golgi lumen endosome lumen secretory granule lumen
Primary reference	Crystallographic characterization of two novel crystal forms of human insulin induced by chaotropic agents and a shift in pH., Norrman M, Schluckebier G, BMC Struct Biol. 2007 Dec 19;7(1):83. PMID:18093308

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk] Biological Unit Coordinates (2om1.pdb1.gz) 58 Kb Biological Unit Coordinates (2om1.pdb2.gz) 59 Kb Biological Unit Coordinates (2om1.pdb3.gz) 56 Kb LPC: Ligand-Protein Contacts for 2OM1 CSU: Contacts of Structural Units for 2OM1 Likely Quarternary Molecular Structure file(s) for 2OM1 Structure Factors (820 Kb) Retrieve 2OM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OM1 from S2C, [Save to disk] Re-refined 2om1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OM1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2OM1

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2OM1, from MSDmotif at EBI Fold representative 2om1 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2om1_1] [2om1_2] [2om1_3] [2om1_4] [2om1_A] [2om1_B] [2om1_C] [2om1_D] [2om1_E] [2om1_F] [2om1_G] [2om1_H] [2om1_I] [2om1_J] [2om1_K] [2om1_L] [2om1_Q] [2om1_R] [2om1_S] [2om1_T] [2om1_U] [2om1_V] [2om1_X] [2om1_Y] [2om1_a] [2om1_b] [2om1_c] [2om1_d] [2om1_e] [2om1_f] [2om1_g] [2om1_h] [2om1_i] [2om1_j] [2om1_k] [2om1_l] SWISS-PROT database: [P01308] Domain organization of [INS_HUMAN] by SWISSPFAM Domain found in 2OM1: [IlGF ] by SMART Alignments of the sequence of 2OM1 with the sequences similar proteins can be viewed for 2OM1's classification [INS_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [INS_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2OM1

Community annotation for 2OM1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---