2OME Oxidoreductase date Jan 22, 2007
title Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed Wit
authors E.S.Pilka, K.Guo, A.Rojkova, J.E.Debreczeni, K.L.Kavanagh, F.Von C.H.Arrowsmith, J.Weigelt, A.Edwards, M.Sundstrom, U.Oppermann, Structural Genomics Consortium (Sgc)
compound source
Molecule: C-Terminal-Binding Protein 2
Chain: A, B, C, D, E, F, G, H
Fragment: Residues 31-364
Synonym: Ctbp2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctbp2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.754 141.574 138.215 90.00 98.93 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (406 Kb) [Save to disk]
  • Biological Unit Coordinates (2ome.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (2ome.pdb2.gz) 104 Kb
  • Biological Unit Coordinates (2ome.pdb3.gz) 104 Kb
  • Biological Unit Coordinates (2ome.pdb4.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2OME
  • CSU: Contacts of Structural Units for 2OME
  • Likely Quarternary Molecular Structure file(s) for 2OME
  • Structure Factors (1257 Kb)
  • Retrieve 2OME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OME from S2C, [Save to disk]
  • Re-refined 2ome structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OME
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OME, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ome_D] [2ome_G] [2ome_B] [2ome_H] [2ome_F] [2ome_E] [2ome_A] [2ome] [2ome_C]
  • SWISS-PROT database: [P56545]
  • Domain organization of [CTBP2_HUMAN] by SWISSPFAM
    • Other resources with information on 2OME
  • Community annotation for 2OME at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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