2OMU Cell Invasion Cell Adhesion date Jan 23, 2007
title Crystal Structure Of Inla G194s+S Y369shec1 Complex
authors T.Wollert, D.W.Heinz, W.D.Schubert
compound source
Molecule: Internalin-A
Chain: A
Fragment: Internalin Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 169963
Strain: Egd-E
Gene: Inla
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex

Molecule: Epithelial-Cadherin
Chain: B
Fragment: N-Terminal Domain Of Human E-Cadherin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdh1, Cdhe, Uvo
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: P 1
R_factor 0.164 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.010 54.273 68.643 74.98 80.82 67.36
method X-Ray Diffractionresolution 1.80 Å
ligand CA, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThermodynamically reengineering the listerial invasion complex InlA/E-cadherin., Wollert T, Heinz DW, Schubert WD, Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13960-5. Epub 2007 Aug 22. PMID:17715295
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (2omu.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 2OMU
  • CSU: Contacts of Structural Units for 2OMU
  • Likely Quarternary Molecular Structure file(s) for 2OMU
  • Structure Factors (915 Kb)
  • Retrieve 2OMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OMU from S2C, [Save to disk]
  • Re-refined 2omu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OMU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OMU, from MSDmotif at EBI
  • Fold representative 2omu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2omu_A] [2omu] [2omu_B]
  • SWISS-PROT database: [P12830] [P25146] [Q4EQX8]
  • Domain organization of [CADH1_HUMAN] [INLA_LISMO] [Q4EQX8_LISMO] by SWISSPFAM
  • Domains found in 2OMU: [CA] [LRR ] by SMART
  • Other resources with information on 2OMU
  • Community annotation for 2OMU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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