2OMV Cell Invasion Cell Adhesion date Jan 23, 2007
title Crystal Structure Of Inla S192n Y369shec1 Complex
authors T.Wollert, D.W.Heinz, W.D.Schubert
compound source
Molecule: Internalin-A
Chain: A
Fragment: Internalin Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 169963
Strain: Egd-E
Gene: Inla
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex

Molecule: Epithelial-Cadherin
Chain: B
Fragment: N-Terminal Domain Of Human E-Cadherin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdh1, Cdhe, Uvo
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: P 21 21 21
R_factor 0.153 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.373 87.377 110.955 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceExtending the host range of Listeria monocytogenes by rational protein design., Wollert T, Pasche B, Rochon M, Deppenmeier S, van den Heuvel J, Gruber AD, Heinz DW, Lengeling A, Schubert WD, Cell. 2007 Jun 1;129(5):891-902. PMID:17540170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (2omv.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 2OMV
  • CSU: Contacts of Structural Units for 2OMV
  • Likely Quarternary Molecular Structure file(s) for 2OMV
  • Structure Factors (749 Kb)
  • Retrieve 2OMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OMV from S2C, [Save to disk]
  • Re-refined 2omv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OMV, from MSDmotif at EBI
  • Fold representative 2omv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2omv] [2omv_B] [2omv_A]
  • SWISS-PROT database: [P12830] [P25146]
  • Domain organization of [CADH1_HUMAN] [INLA_LISMO] by SWISSPFAM
  • Domains found in 2OMV: [CA] [LRR ] by SMART
  • Other resources with information on 2OMV
  • Community annotation for 2OMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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