OCA Atlas for 2OO5

2OO5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAP, SO4, TXD

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B	NAD(P)+ transhydrogenase (B-...

Primary reference

Structures of the dI(2)dIII(1) Complex of Proton-Translocating Transhydrogenase with Bound, Inactive Analogues of NADH and NADPH Reveal Active Site Geometries(,)., Bhakta T, Whitehead SJ, Snaith JS, Dafforn TR, Wilkie J, Rajesh S, White SA, Jackson JB, Biochemistry. 2007 Mar 20;46(11):3304-18. Epub 2007 Feb 27. PMID:17323922

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]

Biological Unit Coordinates (2oo5.pdb1.gz) 251 Kb

LPC: Ligand-Protein Contacts for 2OO5

CSU: Contacts of Structural Units for 2OO5

Likely Quarternary Molecular Structure file(s) for 2OO5

Structure Factors (225 Kb)

Retrieve 2OO5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2OO5 from S2C, [Save to disk]

Re-refined 2oo5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OO5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oo5] [2oo5_A] [2oo5_B] [2oo5_C]

SWISS-PROT database: [P0C186] [P0C188]

Belongs to the proton-translocating transhydrogenase (pth) family

according to TCDB.

Domains found in 2OO5: [AlaDh_PNT_C] [AlaDh_PNT_N ] by SMART

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