2OPS Transferase date Jan 30, 2007
title Crystal Structure Of Y188c Mutant Hiv-1 Reverse Transcriptas Complex With Gw420867x.
authors J.Ren, C.E.Nichols, P.P.Chamberlain, K.L.Weaver, S.A.Short, J.H.C J.Kleim, D.K.Stammers
compound source
Molecule: Reverse Transcriptaseribonuclease H
Chain: A
Fragment: P66
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Hiv-1 M:B_hxb2r
Organism_taxid: 11706
Strain: Hxb2 Isolate
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dg2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk233-2

Molecule: P51 Rt
Chain: B
Fragment: P51
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Hiv-1 M:B_hxb2r
Organism_taxid: 11706
Strain: Hxb2 Isolate
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dg2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk233-2
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.500 110.300 72.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CSD, HBQ, PO4 BindingDB enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceRelationship of Potency and Resilience to Drug Resistant Mutations for GW420867X Revealed by Crystal Structures of Inhibitor Complexes for Wild-Type, Leu100Ile, Lys101Glu, and Tyr188Cys Mutant HIV-1 Reverse Transcriptases., Ren J, Nichols CE, Chamberlain PP, Weaver KL, Short SA, Chan JH, Kleim JP, Stammers DK, J Med Chem. 2007 May 17;50(10):2301-2309. Epub 2007 Apr 19. PMID:17441703
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (2ops.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 2OPS
  • CSU: Contacts of Structural Units for 2OPS
  • Likely Quarternary Molecular Structure file(s) for 2OPS
  • Structure Factors (411 Kb)
  • Retrieve 2OPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OPS from S2C, [Save to disk]
  • Re-refined 2ops structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OPS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OPS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ops_B] [2ops] [2ops_A]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Other resources with information on 2OPS
  • Community annotation for 2OPS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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