OCA Atlas for 2OPV

2OPV

Rna Binding Protein

date

Jan 30, 2007

title

Solution Nmr Structure Of The Second Domain Of Ksrp

authors

I.Diaz-Moreno, A.Ramos, M.F.Garcia-Mayoral, D.Hollingworth

compound

source

Molecule: Khsrp Protein
Chain: A
Synonym: Kh1 Domain Of K-Homology Splicing Recognition Prot
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Khsrp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Jdk

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (526 Kb) [Save to disk]

Biological Unit Coordinates (2opv.pdb1.gz) 21 Kb

CSU: Contacts of Structural Units for 2OPV

Retrieve 2OPV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2OPV from S2C, [Save to disk]

View 2OPV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OPV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2OPV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2opv_A] [2opv]

SWISS-PROT database: [Q92945]

Domain organization of [FUBP2_HUMAN] by SWISSPFAM

Domain found in 2OPV: [KH ] by SMART

Other resources with information on 2OPV

Community annotation for 2OPV at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]