2OQ6	Oxidoreductase	date	Jan 31, 2007
title	Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptid Trimethylated At Lys9
authors	E.S.Pilka, S.S.Ng, K.L.Kavanagh, M.A.Mcdonough, P.Savitsky, F.Von C.H.Arrowsmith, J.Weigelt, A.Edwards, M.Sundstrom, C.J.Schofiel U.Oppermann, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Jmjc Domain-Containing Histone Demethylation Prot Chain: A, B Synonym: Jumonji Domain-Containing Protein 2a Ec: 1.14.11.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jmjd2a, Jhdm3a, Jmjd2, Kiaa0677 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
Molecule: Synthetic Peptide Chain: C, D Engineered: Yes		Synthetic: Yes Other_details: Synthetic Peptide
symmetry	Space Group: P 21 21 2	R_factor 0.163 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.347 149.880 57.260 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ALY, M3L, NI, OGA, ZN BindingDB	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
Primary reference	Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity., Ng SS, Kavanagh KL, McDonough MA, Butler D, Pilka ES, Lienard BM, Bray JE, Savitsky P, Gileadi O, von Delft F, Rose NR, Offer J, Scheinost JC, Borowski T, Sundstrom M, Schofield CJ, Oppermann U, Nature. 2007 Jul 5;448(7149):87-91. Epub 2007 Jun 24. PMID:17589501

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (2oq6.pdb1.gz) 62 Kb Biological Unit Coordinates (2oq6.pdb2.gz) 64 Kb LPC: Ligand-Protein Contacts for 2OQ6 CSU: Contacts of Structural Units for 2OQ6 Likely Quarternary Molecular Structure file(s) for 2OQ6 Structure Factors (872 Kb) Retrieve 2OQ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OQ6 from S2C, [Save to disk] Re-refined 2oq6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OQ6 in 3D

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Visual 3D analysis of 2OQ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OQ6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oq6_A] [2oq6_C] [2oq6_B] [2oq6_D] [2oq6] SWISS-PROT database: [O75164] Domain organization of [KDM4A_HUMAN] by SWISSPFAM Domains found in 2OQ6: [JmjC] [JmjN ] by SMART

Other resources with information on 2OQ6

Community annotation for 2OQ6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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