OCA Atlas for 2OQJ

2OQJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Primary reference

A peptide inhibitor of HIV-1 neutralizing antibody 2G12 is not a structural mimic of the natural carbohydrate epitope on gp120., Menendez A, Calarese DA, Stanfield RL, Chow KC, Scanlan CN, Kunert R, Katinger H, Burton DR, Wilson IA, Scott JK, FASEB J. 2008 May;22(5):1380-92. Epub 2008 Jan 15. PMID:18198210

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]

Biological Unit Coordinates (2oqj.pdb1.gz) 134 Kb

Biological Unit Coordinates (2oqj.pdb2.gz) 134 Kb

Biological Unit Coordinates (2oqj.pdb3.gz) 262 Kb

CSU: Contacts of Structural Units for 2OQJ

Likely Quarternary Molecular Structure file(s) for 2OQJ

Structure Factors (408 Kb)

Retrieve 2OQJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2OQJ from S2C, [Save to disk]

Re-refined 2oqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OQJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oqj] [2oqj_A] [2oqj_B] [2oqj_C] [2oqj_D] [2oqj_E] [2oqj_F] [2oqj_G] [2oqj_H] [2oqj_I] [2oqj_J] [2oqj_K] [2oqj_L]

SWISS-PROT database:

Domains found in 2OQJ: [IG_like] [IGv ] by SMART

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