2OQS Peptide-Binding Protein date Feb 01, 2007
title Structure Of The Hdlgsap97 Pdz2 In Complex With Hpv-18 Papillomavirus E6 Peptide
authors Y.Liu, J.D.Baleja, G.D.Henry, R.S.Hegde
compound source
Molecule: Disks Large Homolog 1
Chain: A
Fragment: Second Pdz Domain, Residues 318-406
Synonym: Synapse-Associated Protein 97, Sap-97, Hdlg
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a(+)

Molecule: C-Terminal Hpv-18 E6 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapiens (Human)
methodSolution NMR
Primary referenceSolution Structure of the hDlg/SAP97 PDZ2 Domain and Its Mechanism of Interaction with HPV-18 Papillomavirus E6 Protein(,)., Liu Y, Henry GD, Hegde RS, Baleja JD, Biochemistry. 2007 Aug 22;. PMID:17713926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (849 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2OQS
  • Original NMR restraints for 2OQS from PDB
  • Retrieve 2OQS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OQS from S2C, [Save to disk]
  • View 2OQS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OQS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OQS, from MSDmotif at EBI
  • Fold representative 2oqs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oqs] [2oqs_B] [2oqs_A]
  • SWISS-PROT database: [Q12959]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [DLG1_HUMAN] by SWISSPFAM
  • Domain found in 2OQS: [PDZ ] by SMART
  • Other resources with information on 2OQS
  • Community annotation for 2OQS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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