2OT0 Lyase date Feb 07, 2007
title Fructose-1,6-Bisphosphate Aldolase From Rabbit Muscle In Complex With A C-Terminal Peptide Of Wiskott-Aldrich Syndrome Protein
authors M.St-Jean, T.Izard, J.Sygusch
compound source
Molecule: Fructose-Bisphosphate Aldolase A
Chain: A, B, C, D
Synonym: Muscle-Type Aldolase
Ec: 4.1.2.13
Engineered: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Aldoa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Si
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppb14

Molecule: Wiskott-Aldrich Syndrome Protein C-Terminal Peptide;
Chain: E, F, G, H
Synonym: Wasp
Engineered: Yes

Synthetic: Yes
Other_details: The Sequence Of The Peptide Occurs Naturally In Human Wiskott-Aldrich Syndrome Protein
symmetry Space Group: P 1 21 1
R_factor 0.152 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.084 56.705 156.188 90.00 97.78 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand
enzyme Lyase E.C.4.1.2.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA hydrophobic pocket in the active site of glycolytic aldolase mediates interactions with Wiskott-Aldrich syndrome protein., St-Jean M, Izard T, Sygusch J, J Biol Chem. 2007 May 11;282(19):14309-15. Epub 2007 Feb 27. PMID:17329259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (2ot0.pdb1.gz) 256 Kb
  • CSU: Contacts of Structural Units for 2OT0
  • Likely Quarternary Molecular Structure file(s) for 2OT0
  • Structure Factors (995 Kb)
  • Retrieve 2OT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OT0 from S2C, [Save to disk]
  • Re-refined 2ot0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OT0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OT0, from MSDmotif at EBI
  • Fold representative 2ot0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ot0]
  • SWISS-PROT database: [P00883] [P42768]
  • Domain organization of [ALDOA_RABIT] [WASP_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2OT0 with the sequences similar proteins can be viewed for 2OT0's classification [ALDOA_RABIT] [WASP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALDOA_RABIT] [WASP_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2OT0
  • Community annotation for 2OT0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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