2OTY	Hydrolase	date	Feb 09, 2007
title	1,2-Dichlorobenzene In Complex With T4 Lysozyme L99a
authors	A.P.Graves, B.K.Shoichet
compound		source
Molecule: Lysozyme Chain: X Synonym: Lysis Protein, Muramidase, Endolysin Ec: 3.2.1.17 Engineered: Yes		Organism_scientific: Enterobacteria Phage T4 Organism_taxid: 10665 Gene: E Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: M13
symmetry	Space Group: P 32 2 1	R_factor 0.196 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.210 60.210 97.031 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.83 Å
ligand	BME, PO4, YAN	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	Predicting absolute ligand binding free energies to a simple model site., Mobley DL, Graves AP, Chodera JD, McReynolds AC, Shoichet BK, Dill KA, J Mol Biol. 2007 Aug 24;371(4):1118-34. Epub 2007 Jun 8. PMID:17599350

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (2oty.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 2OTY CSU: Contacts of Structural Units for 2OTY Likely Quarternary Molecular Structure file(s) for 2OTY Structure Factors (166 Kb) Retrieve 2OTY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OTY from S2C, [Save to disk] Re-refined 2oty structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OTY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OTY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OTY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oty_X] [2oty] SWISS-PROT database: [P00720] Domain organization of [LYS_BPT4] by SWISSPFAM

Other resources with information on 2OTY

Community annotation for 2OTY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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