2OVD Transport Protein,Ligand Binding Protein date Feb 13, 2007
title Crystal Structure Of Human Complement Protein C8gamma With L
authors B.Chiswell, L.L.Lovelace, C.Brannen, E.A.Ortlund, L.Lebioda, J.M.
compound source
Molecule: Complement Component 8, Gamma Polypeptide
Chain: A
Synonym: Complement Protein C8gamma
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C8g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami B(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-17b
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.081 59.539 70.836 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand DAO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural features of the ligand binding site on human complement protein C8gamma: A member of the lipocalin family., Chiswell B, Lovelace LL, Brannen C, Ortlund EA, Lebioda L, Sodetz JM, Biochim Biophys Acta. 2007 May;1774(5):637-44. Epub 2007 Mar 20. PMID:17452033
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2ovd.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2OVD
  • CSU: Contacts of Structural Units for 2OVD
  • Likely Quarternary Molecular Structure file(s) for 2OVD
  • Structure Factors (153 Kb)
  • Retrieve 2OVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OVD from S2C, [Save to disk]
  • Re-refined 2ovd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OVD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OVD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ovd] [2ovd_A]
  • SWISS-PROT database: [P07360]
  • Domain organization of [CO8G_HUMAN] by SWISSPFAM
  • Other resources with information on 2OVD
  • Community annotation for 2OVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science