2OVJ Signaling Protein date Feb 14, 2007
title The Crystal Structure Of The Human Rac Gtpase Activating Pro (Racgap1) Mgcracgap.
authors L.Shrestha, E.Papagrigoriou, M.Soundararajan, J.Elkins, C.Johans Delft, A.C.W.Pike, N.Burgess, A.Turnbull, J.Debreczeni, F.Gorrec C.Umeano, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, D.A Structural Genomics Consortium (Sgc)
compound source
Molecule: Rac Gtpase-Activating Protein 1
Chain: A
Fragment: Rho-Gap Domain
Synonym: Mgcracgap
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Racgap1, Kiaa1478, Mgcracgap
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.913 53.548 67.979 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand 7PE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2ovj.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2OVJ
  • CSU: Contacts of Structural Units for 2OVJ
  • Likely Quarternary Molecular Structure file(s) for 2OVJ
  • Structure Factors (456 Kb)
  • Retrieve 2OVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OVJ from S2C, [Save to disk]
  • Re-refined 2ovj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OVJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OVJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ovj] [2ovj_A]
  • SWISS-PROT database: [Q9H0H5]
  • Domain organization of [RGAP1_HUMAN] by SWISSPFAM
  • Domain found in 2OVJ: [RhoGAP ] by SMART
  • Other resources with information on 2OVJ
  • Community annotation for 2OVJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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