2P01 Cell Adhesion date Feb 28, 2007
title The Structure Of Receptor-Associated Protein(Rap)
authors D.Lee, J.D.Walsh, M.Migliorini, P.Yu, T.Cai, C.D.Schwieters, S.Krueger, D.K.Strickland, Y.X.Wang
compound source
Molecule: Alpha-2-Macroglobulin Receptor-Associated Protein;
Chain: A
Synonym: Alpha-2- Mrap, Low Density Lipoprotein Receptor- Related Protein-Associated Protein 1, Rap
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of receptor-associated protein (RAP)., Lee D, Walsh JD, Migliorini M, Yu P, Cai T, Schwieters CD, Krueger S, Strickland DK, Wang YX, Protein Sci. 2007 Aug;16(8):1628-40. PMID:17656581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1810 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2P01
  • Retrieve 2P01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P01 from S2C, [Save to disk]
  • View 2P01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P01
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2P01, from MSDmotif at EBI
  • Fold representative 2p01 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p01]
  • SWISS-PROT database: [P30533]
  • Domain organization of [AMRP_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2P01 with the sequences similar proteins can be viewed for 2P01's classification [AMRP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AMRP_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2P01
  • Community annotation for 2P01 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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