2P01	Cell Adhesion	date	Feb 28, 2007
title	The Structure Of Receptor-Associated Protein(Rap)
authors	D.Lee, J.D.Walsh, M.Migliorini, P.Yu, T.Cai, C.D.Schwieters, S.Krueger, D.K.Strickland, Y.X.Wang
compound		source
Molecule: Alpha-2-Macroglobulin Receptor-Associated Protein; Chain: A Synonym: Alpha-2- Mrap, Low Density Lipoprotein Receptor- Related Protein-Associated Protein 1, Rap		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
method	Solution NMR
Gene Ontology	Chain Function Process Component A asialoglycoprotein receptor ... heparin binding lipase binding receptor antagonist activity... low-density lipoprotein part... unfolded protein binding very-low-density lipoprotein... protein folding negative regulation of very-... vesicle-mediated transport negative regulation of prote... extracellular negative regul... negative regulation of beta-... extracellular region cytoplasm endoplasmic reticulum plasma membrane cell surface integral to membrane vesicle rough endoplasmic reticulum ...
Primary reference	The structure of receptor-associated protein (RAP)., Lee D, Walsh JD, Migliorini M, Yu P, Cai T, Schwieters CD, Krueger S, Strickland DK, Wang YX, Protein Sci. 2007 Aug;16(8):1628-40. PMID:17656581

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1810 Kb) [Save to disk] CSU: Contacts of Structural Units for 2P01 Retrieve 2P01 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P01 from S2C, [Save to disk]

View 2P01 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2P01

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2P01, from MSDmotif at EBI Fold representative 2p01 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

SWISS-PROT database: [P30533] Domain organization of [AMRP_HUMAN] by SWISSPFAM Alignments of the sequence of 2P01 with the sequences similar proteins can be viewed for 2P01's classification [AMRP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AMRP_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2P01

Community annotation for 2P01 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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