2P0E Transferase date Feb 28, 2007
title Human Nicotinamide Riboside Kinase 1 In Complex With Tiazofu
authors W.M.Rabeh, W.Tempel, L.Nedyalkova, R.Landry, C.H.Arrowsmith, A.M. M.Sundstrom, J.Weigelt, A.Bochkarev, C.Brenner, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Nicotinamide Riboside Kinase 1
Chain: A
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrk1, C9orf95
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: C 2 2 21
R_factor 0.175 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.608 141.571 62.005 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, MSE, PO4, TIZ, UNX enzyme Transferase E.C.2.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNicotinamide Riboside Kinase Structures Reveal New Pathways to NAD(+)., Tempel W, Rabeh WM, Bogan KL, Belenky P, Wojcik M, Seidle HF, Nedyalkova L, Yang T, Sauve AA, Park HW, Brenner C, PLoS Biol. 2007 Oct 2;5(10):e263. PMID:17914902
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2p0e.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2P0E
  • CSU: Contacts of Structural Units for 2P0E
  • Likely Quarternary Molecular Structure file(s) for 2P0E
  • Structure Factors (446 Kb)
  • Retrieve 2P0E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P0E from S2C, [Save to disk]
  • Re-refined 2p0e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P0E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P0E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P0E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p0e_A] [2p0e]
  • SWISS-PROT database: [Q9NWW6]
  • Domain organization of [NRK1_HUMAN] by SWISSPFAM
  • Other resources with information on 2P0E
  • Community annotation for 2P0E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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