2P0H Ligand Binding Protein date Feb 28, 2007
title Arhgap9 Ph Domain In Complex With Ins(1,3,4)P3
authors D.F.J.Ceccarelli, I.Blasutig, M.Goudreault, J.Ruston, T.Pawson, F
compound source
Molecule: Rho Gtpase-Activating Protein 9
Chain: A
Fragment: Pleckstrin Homology Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgap9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.920 36.550 112.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand I3S enzyme
Primary referenceNon-canonical Interaction of Phosphoinositides with Pleckstrin Homology Domains of Tiam1 and ArhGAP9., Ceccarelli DF, Blasutig IM, Goudreault M, Li Z, Ruston J, Pawson T, Sicheri F, J Biol Chem. 2007 May 4;282(18):13864-74. Epub 2007 Mar 5. PMID:17339315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2p0h.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2P0H
  • CSU: Contacts of Structural Units for 2P0H
  • Likely Quarternary Molecular Structure file(s) for 2P0H
  • Structure Factors (62 Kb)
  • Retrieve 2P0H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P0H from S2C, [Save to disk]
  • Re-refined 2p0h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P0H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P0H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P0H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p0h] [2p0h_A]
  • SWISS-PROT database: [Q9BRR9]
  • Domain organization of [RHG09_HUMAN] by SWISSPFAM
  • Domain found in 2P0H: [PH ] by SMART
  • Other resources with information on 2P0H
  • Community annotation for 2P0H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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