2P54	Transcription	date	Mar 14, 2007
title	A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide An
authors	R.X.Xu, H.E.Xu, M.L.Sierra, V.G.Montana, M.H.Lambert, P.M.Pianett
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Alpha Chain: A Fragment: Ppar Alpha Synonym: Ppar-Alpha Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ppara, Nr1c1, Ppar Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor Coactivator 1 Chain: B Fragment: Src1 Peptide Synonym: Ncoa-1, Steroid Receptor Coactivator 1, Src-1, Rip Protein Hin-2, Renal Carcinoma Antigen Ny-Ren-52; Ec: 2.3.1.48 Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans
symmetry	Space Group: P 21 21 2	R_factor 0.204 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.263 103.535 49.850 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.79 Å
ligand	735 BindingDB	enzyme	Transferase E.C.2.3.1.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Substituted 2-[(4-aminomethyl)phenoxy]-2-methylpropionic acid PPARalpha agonists. 1. Discovery of a novel series of potent HDLc raising agents., Sierra ML, Beneton V, Boullay AB, Boyer T, Brewster AG, Donche F, Forest MC, Fouchet MH, Gellibert FJ, Grillot DA, Lambert MH, Laroze A, Le Grumelec C, Linget JM, Montana VG, Nguyen VL, Nicodeme E, Patel V, Penfornis A, Pineau O, Pohin D, Potvain F, Poulain G, Ruault CB, Saunders M, Toum J, Xu HE, Xu RX, Pianetti PM, J Med Chem. 2007 Feb 22;50(4):685-95. Epub 2007 Jan 23. PMID:17243659

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (2p54.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 2P54 CSU: Contacts of Structural Units for 2P54 Likely Quarternary Molecular Structure file(s) for 2P54 Structure Factors (425 Kb) Retrieve 2P54 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P54 from S2C, [Save to disk] Re-refined 2p54 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P54 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2P54

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2P54, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p54] [2p54_A] [2p54_B] SWISS-PROT database: [Q15788] [Q07869] Domain organization of [NCOA1_HUMAN] [PPARA_HUMAN] by SWISSPFAM Domain found in 2P54: [HOLI ] by SMART

Other resources with information on 2P54

Community annotation for 2P54 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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