2P5S Signaling Protein date Mar 16, 2007
title Rab Domain Of Human Rasef In Complex With Gdp
authors H.Zhu, J.Wang, Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edw M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound source
Molecule: Ras And Ef-Hand Domain Containing
Chain: A, B
Fragment: Residues 533-712
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rasef
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Codon(+) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic-Thrombin
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.275 42.524 75.656 90.00 98.91 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand GDP, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2p5s.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2P5S
  • CSU: Contacts of Structural Units for 2P5S
  • Likely Quarternary Molecular Structure file(s) for 2P5S
  • Structure Factors (360 Kb)
  • Retrieve 2P5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P5S from S2C, [Save to disk]
  • Re-refined 2p5s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P5S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P5S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p5s] [2p5s_A] [2p5s_B]
  • SWISS-PROT database: [Q8IZ41]
  • Domain organization of [RASEF_HUMAN] by SWISSPFAM
  • Domain found in 2P5S: [RAB ] by SMART
  • Other resources with information on 2P5S
  • Community annotation for 2P5S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science