2P64	Ligase	date	Mar 16, 2007
title	D Domain Of B-Trcp
authors	D.Neculai, S.Orlicky, D.Ceccarelli
compound		source
Molecule: F-Boxwd Repeat Protein 1a Chain: A, B Fragment: D Domain Synonym: F-Box And Wd Repeats Protein Beta-Trcp, E3rsikappa Pikappabalpha-E3 Receptor Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Btrc, Btrcp, Fbw1a, Fbxw1a Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
symmetry	Space Group: P 43 21 2	R_factor 0.239 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.316 71.316 116.301 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CD, MSE	enzyme
note	2P64 is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Suprafacial orientation of the SCFCdc4 dimer accommodates multiple geometries for substrate ubiquitination., Tang X, Orlicky S, Lin Z, Willems A, Neculai D, Ceccarelli D, Mercurio F, Shilton BH, Sicheri F, Tyers M, Cell. 2007 Jun 15;129(6):1165-76. PMID:17574027

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk] Biological Unit Coordinates (2p64.pdb1.gz) 19 Kb LPC: Ligand-Protein Contacts for 2P64 CSU: Contacts of Structural Units for 2P64 Likely Quarternary Molecular Structure file(s) for 2P64 Structure Factors (163 Kb) Retrieve 2P64 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P64 from S2C, [Save to disk] Re-refined 2p64 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P64 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2P64

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2P64, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p64_A] [2p64] [2p64_B] SWISS-PROT database: [Q9Y297] Domain organization of [FBW1A_HUMAN] by SWISSPFAM Domain found in 2P64: [Beta-TrCP_D ] by SMART

Other resources with information on 2P64

Community annotation for 2P64 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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