2P69	Hydrolase	date	Mar 16, 2007
title	Crystal Structure Of Human Pyridoxal Phosphate Phosphatase W
authors	U.A.Ramagopal, J.Freeman, M.Izuka, R.Toro, J.M.Sauder, S.K.Burley S.C.Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc)
compound		source
Molecule: Pyridoxal Phosphate Phosphatase Chain: A Synonym: Plp Phosphatase Ec: 3.1.3.74 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdxp, Plp, Plpp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry	Space Group: P 43 21 2	R_factor 0.208 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.559 54.559 212.537 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	CA, MSE, PLP	enzyme	Hydrolase E.C.3.1.3.74 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural genomics of protein phosphatases., Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK, J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (2p69.pdb1.gz) 91 Kb LPC: Ligand-Protein Contacts for 2P69 CSU: Contacts of Structural Units for 2P69 Likely Quarternary Molecular Structure file(s) for 2P69 Structure Factors (116 Kb) Retrieve 2P69 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P69 from S2C, [Save to disk] Re-refined 2p69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P69 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2P69

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2P69, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p69] [2p69_A] SWISS-PROT database: [Q96GD0] Domain organization of [PLPP_HUMAN] by SWISSPFAM

Other resources with information on 2P69

Community annotation for 2P69 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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