2P7Z Hormone Receptor date Mar 21, 2007
title Estrogen Related Receptor Gamma In Complex With 4-Hydroxy- Tamoxifen
authors M.C.Abad
compound source
Molecule: Estrogen-Related Receptor Gamma
Chain: A
Synonym: Estrogen Receptor-Related Protein 3, Err Gamma-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esrrg, Err3, Errg2, Kiaa0832, Nr3b3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 41 21 2
R_factor 0.213 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.990 63.990 137.952 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand OHT BindingDB enzyme
Primary referenceStructural determination of estrogen-related receptor gamma in the presence of phenol derivative compounds., Abad MC, Askari H, O'Neill J, Klinger AL, Milligan C, Lewandowski F, Springer B, Spurlino J, Rentzeperis D, J Steroid Biochem Mol Biol. 2008 Jan;108(1-2):44-54. Epub 2007 Sep 14. PMID:17964775
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2p7z.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2P7Z
  • CSU: Contacts of Structural Units for 2P7Z
  • Likely Quarternary Molecular Structure file(s) for 2P7Z
  • Structure Factors (87 Kb)
  • Retrieve 2P7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P7Z from S2C, [Save to disk]
  • Re-refined 2p7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2P7Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2P7Z, from MSDmotif at EBI
  • Fold representative 2p7z from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p7z_A]
  • SWISS-PROT database: [P62508]
  • Domain organization of [ERR3_HUMAN] by SWISSPFAM
  • Domain found in 2P7Z: [HOLI ] by SMART
  • Alignments of the sequence of 2P7Z with the sequences similar proteins can be viewed for 2P7Z's classification [ERR3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ERR3_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2P7Z
  • Community annotation for 2P7Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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