2P80 Oxidoreductase date Mar 21, 2007
title Solution Structure Of The Complex Between Nitrite Reductase And Pseudoazurin From A. Faecalis
authors M.D.Vlasie, M.Ubbink
compound source
Molecule: Copper-Containing Nitrite Reductase
Chain: A, B, C
Synonym: Cu-Nir
Ec: 1.7.2.1
Engineered: Yes
Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: S-6
Gene: Nirk, Nir
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Pseudoazurin
Chain: D
Synonym: Cupredoxin, Blue Copper Protein
Engineered: Yes

Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: S-6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
methodSolution NMR
ligand CU, GD enzyme Oxidoreductase E.C.1.7.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6229 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2P80
  • CSU: Contacts of Structural Units for 2P80
  • Original NMR restraints for 2P80 from PDB
  • Retrieve 2P80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P80 from S2C, [Save to disk]
  • View 2P80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P80
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2P80, from MSDmotif at EBI
  • Fold representative 2p80 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p80_B] [2p80_C] [2p80_D] [2p80] [2p80_A]
  • SWISS-PROT database: [P04377] [P38501]
  • Domain organization of [AZUP_ALCFA] [NIR_ALCFA] by SWISSPFAM
  • Other resources with information on 2P80
  • Community annotation for 2P80 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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