2P84 Structural Genomics, Unknown Function date Mar 21, 2007
title Crystal Structure Of Orf041 From Bacteriophage 37
authors V.N.Malashkevich, R.Toro, J.M.Sauder, K.D.Schwinn, D.A.Thompson, J.M.Adams, C.Reyes, C.Lau, J.Gilmore, I.Rooney, T.Wasserman, S.R. S.Emtage, S.K.Burley, S.C.Almo, New York Sgx Research Center F Structural Genomics (Nysgxrc)
compound source
Molecule: Orf041
Chain: A
Engineered: Yes
 Organism_scientific: Staphylococcus Phage
Organism_taxid: 320840
Strain: 37
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: C 2 2 21
R_factor 0.208 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.470 109.370 57.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2p84.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 2P84
  • Likely Quarternary Molecular Structure file(s) for 2P84
  • Structure Factors (362 Kb)
  • Retrieve 2P84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P84 from S2C, [Save to disk]
  • Re-refined 2p84 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P84
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P84, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p84] [2p84_A]
  • SWISS-PROT database: [Q4ZC86]
  • Domain organization of [Q4ZC86_9CAUD] by SWISSPFAM
    • Other resources with information on 2P84
  • Community annotation for 2P84 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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