2P8U Transferase date Mar 23, 2007
title Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Sy
authors A.Turnbull, N.Shafqat, E.Salah, F.H.Niesen, N.Burgess, G.Bunkoczi J.Debreczeni, A.C.W.Pike, C.Umeano, F.Gorrec, F.Von Delft, J.Wei C.H.Arrowsmith, M.Sundstrom, A.Edwards, U.Oppermann, Structural Consortium (Sgc)
compound source
Molecule: Hydroxymethylglutaryl-Coa Synthase, Cytoplasmic
Chain: A, B
Synonym: Hmg-Coa Synthase, 3-Hydroxy-3-Methylglutaryl Coenz Synthase;
Ec: 2.3.3.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmgcs1, Hmgcs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 43 21 2
R_factor 0.159 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.762 92.762 235.532 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand COA, GOL, SCY enzyme Transferase E.C.2.3.3.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structures of Human HMG-CoA Synthase Isoforms Provide Insights into Inherited Ketogenesis Disorders and Inhibitor Design., Shafqat N, Turnbull A, Zschocke J, Oppermann U, Yue WW, J Mol Biol. 2010 Mar 25. PMID:20346956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (2p8u.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 2P8U
  • CSU: Contacts of Structural Units for 2P8U
  • Likely Quarternary Molecular Structure file(s) for 2P8U
  • Structure Factors (550 Kb)
  • Retrieve 2P8U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P8U from S2C, [Save to disk]
  • Re-refined 2p8u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P8U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P8U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2P8U, from MSDmotif at EBI
  • Fold representative 2p8u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p8u_A] [2p8u_B] [2p8u]
  • SWISS-PROT database: [Q01581]
  • Domain organization of [HMCS1_HUMAN] by SWISSPFAM
  • Other resources with information on 2P8U
  • Community annotation for 2P8U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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