2P8V Signaling Protein date Mar 23, 2007
title Crystal Structure Of Human Homer3 Evh1 Domain
authors S.Bouyain, J.Tu, G.N.Huang, P.F.Worley, D.Leahy
compound source
Molecule: Homer Protein Homolog 3
Chain: A
Synonym: Homer-3
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Homer3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7hmt
symmetry Space Group: P 32 2 1
R_factor 0.222 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.470 49.470 80.710 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand SO4 enzyme
Primary referenceNFAT binding and regulation of T cell activation by the cytoplasmic scaffolding Homer proteins., Huang GN, Huso DL, Bouyain S, Tu J, McCorkell KA, May MJ, Zhu Y, Lutz M, Collins S, Dehoff M, Kang S, Whartenby K, Powell J, Leahy D, Worley PF, Science. 2008 Jan 25;319(5862):476-81. PMID:18218901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (2p8v.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2P8V
  • CSU: Contacts of Structural Units for 2P8V
  • Likely Quarternary Molecular Structure file(s) for 2P8V
  • Structure Factors (151 Kb)
  • Retrieve 2P8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P8V from S2C, [Save to disk]
  • Re-refined 2p8v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P8V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P8V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p8v_A] [2p8v]
  • SWISS-PROT database: [Q9NSC5]
  • Domain organization of [HOME3_HUMAN] by SWISSPFAM
  • Domain found in 2P8V: [WH1 ] by SMART
    • Other resources with information on 2P8V
  • Community annotation for 2P8V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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