2PA2	Ribosomal Protein	date	Mar 27, 2007
title	Crystal Structure Of Human Ribosomal Protein L10 Core Domain
authors	M.Nishimura, T.Kaminishi, C.Takemoto, M.Kawazoe, T.Yoshida, A.Tan S.Sugano, M.Shirouzu, T.Ohkubo, S.Yokoyama, Y.Kobayashi, Riken S Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: 60s Ribosomal Protein L10 Chain: A, B Fragment: Core Domain Synonym: Qm Protein, Tumor Suppressor Qm, Laminin Receptor Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32b-L10cd
symmetry	Space Group: P 31 2 1	R_factor 0.240 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.724 52.724 185.489 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	K	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of human ribosomal protein L10 core domain reveals eukaryote-specific motifs in addition to the conserved fold., Nishimura M, Kaminishi T, Takemoto C, Kawazoe M, Yoshida T, Tanaka A, Sugano S, Shirouzu M, Ohkubo T, Yokoyama S, Kobayashi Y, J Mol Biol. 2008 Mar 21;377(2):421-30. Epub 2008 Jan 11. PMID:18258260

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (2pa2.pdb1.gz) 19 Kb Biological Unit Coordinates (2pa2.pdb2.gz) 19 Kb LPC: Ligand-Protein Contacts for 2PA2 CSU: Contacts of Structural Units for 2PA2 Likely Quarternary Molecular Structure file(s) for 2PA2 Structure Factors (222 Kb) Retrieve 2PA2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PA2 from S2C, [Save to disk] Re-refined 2pa2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PA2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PA2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PA2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d2pa2, region A:625-721 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pa2] [2pa2_B] [2pa2_A] SWISS-PROT database: [P27635] Domain organization of [RL10_HUMAN] by SWISSPFAM

Other resources with information on 2PA2

Community annotation for 2PA2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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