2PBD	Structural Protein	date	Mar 28, 2007
title	Ternary Complex Of Profilin-Actin With The Poly-Pro-Gab Doma Vasp
authors	F.Ferron, G.Rebowski, R.Dominguez
compound		source
Molecule: Actin, Alpha Skeletal Muscle Chain: A Fragment: Residues 1-377 Synonym: Alpha-Actin-1		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Tissue: Muscle Other_details: Gene Acta1, Acta
Molecule: Profilin-1 Chain: P Fragment: Residues 2-140 Synonym: Profilin I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Brain Gene: Pfn1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet29
Molecule: Vasodilator-Stimulated Phosphoprotein Chain: V Fragment: Vasp Loading Poly-Pro Site And Gab Domain Synonym: Vasp Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans, Ge
symmetry	Space Group: C 1 2 1	R_factor 0.156 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 119.094 56.589 75.227 90.00 104.75 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	ATP, CA, HIC	enzyme
Gene Ontology	Chain Function Process Component A P V
Primary reference	Structural basis for the recruitment of profilin-actin complexes during filament elongation by Ena/VASP., Ferron F, Rebowski G, Lee SH, Dominguez R, EMBO J. 2007 Oct 4;. PMID:17914456

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (2pbd.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 2PBD CSU: Contacts of Structural Units for 2PBD Structure Factors (1143 Kb) Retrieve 2PBD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PBD from S2C, [Save to disk] Re-refined 2pbd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PBD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PBD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PBD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pbd_P] [2pbd] [2pbd_V] [2pbd_A] SWISS-PROT database: [P68135] [P07737] [P50552] Domain organization of [ACTS_RABIT] [PROF1_HUMAN] [VASP_HUMAN] by SWISSPFAM Domains found in 2PBD: [ACTIN] [PROF ] by SMART

Other resources with information on 2PBD

Community annotation for 2PBD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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