2PF6 Cell Adhesion date Apr 04, 2007
title Lutheran Glycoprotein, N-Terminal Domains 1 And 2
authors N.Burton, R.L.Brady
compound source
Molecule: Lutheran Blood Group Glycoprotein
Chain: A, B
Fragment: N-Terminal Domains 1 And 2
Synonym: B-Cam Cell Surface Glycoprotein, Auberger B Antige Antigen, Cd239 Antigen;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcam, Lu, Msk19
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pee
symmetry Space Group: P 32 2 1
R_factor 0.205 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.248 52.248 256.842 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
Primary referenceThe Laminin 511/521-binding site on the Lutheran blood group glycoprotein is located at the flexible junction of Ig domains 2 and 3., Mankelow TJ, Burton N, Stefansdottir FO, Spring FA, Parsons SF, Pedersen JS, Oliveira CL, Lammie D, Wess T, Mohandas N, Chasis JA, Brady RL, Anstee DJ, Blood. 2007 Nov 1;110(9):3398-406. Epub 2007 Jul 17. PMID:17638854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2pf6.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (2pf6.pdb2.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2PF6
  • Likely Quarternary Molecular Structure file(s) for 2PF6
  • Structure Factors (152 Kb)
  • Retrieve 2PF6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PF6 from S2C, [Save to disk]
  • Re-refined 2pf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PF6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PF6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PF6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pf6_A] [2pf6] [2pf6_B]
  • SWISS-PROT database: [P50895]
  • Domain organization of [BCAM_HUMAN] by SWISSPFAM
  • Domains found in 2PF6: [IG] [IG_like ] by SMART
    • Other resources with information on 2PF6
  • Community annotation for 2PF6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science