2PIH Structural Genomics, Unknown Function date Apr 13, 2007
title Crystal Structure Of Protein Ymca From Bacillus Subtilis, Northeast Structural Genomics Target Sr375
authors J.Seetharaman, M.Abashidze, F.Forouhar, D.Wang, Y.Fang, K.Cunningham, L-C.Ma, R.Xia, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Protein Ymca
Chain: A, B
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 168
Gene: Ymca, Bsu17020
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 1
R_factor 0.207 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.322 52.201 55.448 61.85 90.64 90.01
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
note 2PIH is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2pih.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2PIH
  • CSU: Contacts of Structural Units for 2PIH
  • Likely Quarternary Molecular Structure file(s) for 2PIH
  • Structure Factors (291 Kb)
  • Retrieve 2PIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PIH from S2C, [Save to disk]
  • Re-refined 2pih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PIH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PIH, from MSDmotif at EBI
  • Fold representative 2pih from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pih_A] [2pih_B] [2pih]
  • SWISS-PROT database: [O31779]
  • Domain organization of [YMCA_BACSU] by SWISSPFAM
  • Other resources with information on 2PIH
  • Community annotation for 2PIH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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