2PIH Structural Genomics, Unknown Function date Apr 13, 2007
title Crystal Structure Of Protein Ymca From Bacillus Subtilis, No Structural Genomics Target Sr375
authors J.Seetharaman, M.Abashidze, F.Forouhar, D.Wang, Y.Fang, K.Cunning C.Ma, R.Xia, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Protein Ymca
Chain: A, B
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 168
Gene: Ymca, Bsu17020
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 1
R_factor 0.207 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.322 52.201 55.448 61.85 90.64 90.01
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
note 2PIH is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2pih.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2PIH
  • CSU: Contacts of Structural Units for 2PIH
  • Likely Quarternary Molecular Structure file(s) for 2PIH
  • Structure Factors (291 Kb)
  • Retrieve 2PIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PIH from S2C, [Save to disk]
  • Re-refined 2pih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PIH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PIH, from MSDmotif at EBI
  • Fold representative 2pih from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pih_A] [2pih_B] [2pih]
  • SWISS-PROT database: [O31779]
  • Domain organization of [YMCA_BACSU] by SWISSPFAM
  • Other resources with information on 2PIH
  • Community annotation for 2PIH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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