2PIL Cell Adhesion date Mar 02, 1998
title Crystallographic Structure Of Phosphorylated Pilin From Neis Phosphoserine Sites Modify Type Iv Pilus Surface Chemistry
authors K.T.Forest, S.A.Dunham, M.Koomey, J.A.Tainer
compound source
Molecule: Type 4 Pilin
Chain: A
Synonym: Fimbriae
Organism_scientific: Neisseria Gonorrhoeae
Organism_taxid: 485
Strain: Ms11
Organelle: Pilus
Cellular_location: Extracellular
symmetry Space Group: C 2 2 2
R_factor 0.187 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.580 121.080 26.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand GLA, HTO, MEA, NAG, PT, SEP enzyme
related structures by homologous chain: 1AY2
subcellular loc. Membrane localization by OPM: Bacterial Gram-negative inner membrane
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic structure reveals phosphorylated pilin from Neisseria: phosphoserine sites modify type IV pilus surface chemistry and fibre morphology., Forest KT, Dunham SA, Koomey M, Tainer JA, Mol Microbiol 1999 Feb;31(3):743-52. PMID:10048019
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2pil.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2PIL
  • CSU: Contacts of Structural Units for 2PIL
  • Likely Quarternary Molecular Structure file(s) for 2PIL
  • Retrieve 2PIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PIL from S2C, [Save to disk]
  • View 2PIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PIL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PIL, from MSDmotif at EBI
  • Genome occurence of 2PIL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2pil__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 2pil from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pil] [2pil_A]
  • SWISS-PROT database: [P02974]
  • Domain organization of [FMM1_NEIGO] by SWISSPFAM
  • Other resources with information on 2PIL
  • Community annotation for 2PIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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