2PIN Hormone Receptor date Apr 13, 2007
title Thyroid Receptor Beta In Complex With Inhibitor
authors E.Estebanez-Perpina, N.Jouravel, J.D.Baxter, L.R.Guy, P.Webb, R.J.Fletterick
compound source
Molecule: Thyroid Hormone Receptor Beta-1
Chain: A, B
Fragment: Ligand-Binding Domain (Residues 209-461)
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21
Gene: Thrb, Erba2, Nr1a2, Thr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.130 92.870 58.350 90.00 109.65 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 4HY, LEG, SO4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insight into the mode of action of a direct inhibitor of coregulator binding to the thyroid hormone receptor., Estebanez-Perpina E, Arnold LA, Jouravel N, Togashi M, Blethrow J, Mar E, Nguyen P, Phillips KJ, Baxter JD, Webb P, Guy RK, Fletterick RJ, Mol Endocrinol. 2007 Dec;21(12):2919-28. Epub 2007 Sep 6. PMID:17823305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2pin.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 2PIN
  • CSU: Contacts of Structural Units for 2PIN
  • Likely Quarternary Molecular Structure file(s) for 2PIN
  • Structure Factors (1305 Kb)
  • Retrieve 2PIN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PIN from S2C, [Save to disk]
  • Re-refined 2pin structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PIN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PIN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PIN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pin_B] [2pin] [2pin_A]
  • SWISS-PROT database: [P10828]
  • Domain organization of [THB_HUMAN] by SWISSPFAM
  • Domain found in 2PIN: [HOLI ] by SMART
    • Other resources with information on 2PIN
  • Community annotation for 2PIN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science