2PIS Dna date Apr 13, 2007
title Efforts Toward Expansion Of The Genetic Alphabet: Structure Replication Of Unnatural Base Pairs
authors S.Matsuda, J.D.Fillo, A.A.Henry, S.J.Wilkins, P.Rai, T.J.Dwyer, B.H.Geierstanger, D.E.Wemmer, P.G.Schultz, G.Spraggon, F.E.Rome
compound source
Molecule: Dna (5'-D(Cpgp(Cbr)Pgpapap(Ffd)Ptptpcp 3');
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
 Synthetic: Yes
Other_details: Synthesized Dna
symmetry Space Group: I 41 2 2
R_factor 0.224 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.025 146.025 93.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CBR, FFD, MG enzyme
Primary referenceEfforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs., Matsuda S, Fillo JD, Henry AA, Rai P, Wilkens SJ, Dwyer TJ, Geierstanger BH, Wemmer DE, Schultz PG, Spraggon G, Romesberg FE, J Am Chem Soc. 2007 Aug 29;129(34):10466-73. Epub 2007 Aug 8. PMID:17685517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2pis.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (2pis.pdb2.gz) 12 Kb
  • Biological Unit Coordinates (2pis.pdb3.gz) 12 Kb
  • Biological Unit Coordinates (2pis.pdb4.gz) 12 Kb
  • Biological Unit Coordinates (2pis.pdb5.gz) 11 Kb
  • Biological Unit Coordinates (2pis.pdb6.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 2PIS
  • CSU: Contacts of Structural Units for 2PIS
  • Likely Quarternary Molecular Structure file(s) for 2PIS
  • Retrieve 2PIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PIS from S2C, [Save to disk]
    • View 2PIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PIS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PIS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pis_I] [2pis_E] [2pis_B] [2pis] [2pis_F] [2pis_H] [2pis_A] [2pis_G] [2pis_K] [2pis_D] [2pis_C] [2pis_J] [2pis_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2PIS
  • Community annotation for 2PIS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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