2PIT Hormone Receptor date Apr 13, 2007
title Androgen Receptor Lbd With Small Molecule
authors E.Estebanez-Perpina, A.A.Arnold, J.D.Baxter, P.Webb, R.K.Guy, K.R.Fletterick
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Ligand-Binding Domain (Residues 669-919)
Synonym: Dihydrotestosterone Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Dhtr, Nr3c4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.400 66.430 70.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand 4HY, DHT, SO4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA surface on the androgen receptor that allosterically regulates coactivator binding., Estebanez-Perpina E, Arnold LA, Nguyen P, Rodrigues ED, Mar E, Bateman R, Pallai P, Shokat KM, Baxter JD, Guy RK, Webb P, Fletterick RJ, Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16074-9. Epub 2007 Oct 2. PMID:17911242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2pit.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2PIT
  • CSU: Contacts of Structural Units for 2PIT
  • Likely Quarternary Molecular Structure file(s) for 2PIT
  • Structure Factors (1230 Kb)
  • Retrieve 2PIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PIT from S2C, [Save to disk]
  • Re-refined 2pit structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PIT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PIT, from MSDmotif at EBI
  • Fold representative 2pit from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pit] [2pit_A]
  • SWISS-PROT database: [P10275]
  • Domain organization of [ANDR_HUMAN] by SWISSPFAM
  • Domain found in 2PIT: [HOLI ] by SMART
  • Other resources with information on 2PIT
  • Community annotation for 2PIT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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